script:Submit-example

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This submit script specifies the name of the job (localBlast), what environment to use (/bin/sh), that it need both processors on a single node (nodes=1:ppn=2), will run for at most 10 days, and that TORQUE should email user@my.organization.com when the job exits or aborts. Additionally, the user specified where and what to execute.

               # example of submit file
               PBS -N localBlast
               PBS -S /bin/sh
               PBS -l nodes=1:ppn=2,walltime=240:00:00 
               PBS -M user@my.organization.com 
               PBS -m ea 
               source ~/.bashrc 
               cd $HOME/work/dir 
               sh myBlast.sh -i -v
               # end example of submit file
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